Is gp12 D29p09
From NCBI links:
" LysB of mycobacteriophage D29 is a novel mycolylarabinogalactan esterase that cleaves the ester linkage joining the mycolic acid-rich outer membrane to arabinogalactan, releasing free mycolic acids".
go to :
D29p02
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primary structure gp 12 protein (254 Aa) :
"MSKPWLFTVHGTGQPDPLGPGLPADTARDVLDIYRWQPIGNYPAAAFPMWPSVEKGVAEL ILQIELKLDADPYADFAMAGYSQGAIVVGQVLKHHILPPTGRLHRFLHRLKKVIFWGNPM RQKGFAHSDEWIHPVAAPDTLGILEDRLENLEQYGFEVRDYAHDGDMYASIKEDDLHEYE VAIGRIVMKASGFIGGRDSVVAQLIELGQRPITEGIALAGAIIDALTFFARSRMGDKWPH LYNRYPAVEFLRQI"
From PDB Protein Data Bank:
1) download files:FASTA Sequence, PDB File (Text)
2) examine the protein by mEmboss software
3) if there are the transmembrane regions use MPEX software and Geneious
4)Download the protein file PDB in a Protein viewer software and to observe
This is NBCI model.These protein models are mine:
by Discovery Studio 4.0
