information

Whoever comes in this website may find a hint

Phage therapy is influenced by:

Phage therapy is influenced by:

Country :
the epidemiological situation is different from country to country in terms of circulating bacteria and bacteriophages. Example: a lytic phages from Italy may be no active on the same bacteria (genus and species) isolated from another country and vice versa.
Chronolability
Mutation rate
Phenotypical delay
Phage cocktail
My point of view

From Wikipedia


If the target host* of a phage therapy treatment is not
an animal the term "
biocontrol" (as in phage-mediated biocontrol of bacteria) is usually employed, rather than "phage therapy".

"In silico"

From:"Genomics,Proteomics and Clinical Bacteriology", N.Woodford and Alan P.Johnson

Phrase that emphasizes the fact that many molecular biologists spend increasing amounts of their time in front of a computer screen, generating hypotheses that can subsequently be tested and (hopefully) confirmed in the laboratory.

Monday, 1 September 2014

D29p04



CDS :   2354-2650, 297 bp,  gp4 predicted 11.1 kD protein (98 Aa)
misc_feature: 2405-2569, 165 bp,HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
misc_feature:2486-2569,active site


By Snapgen software:



By Artemis software:



Aa sequence (98Aa):


misc_feature  HNH nucleases, Aa sequence ( 55Aa):





 misc_feature ;active site,Aa sequence :DDHKPNLCRHS


misc-features: start and end:



 HNH nucleases




HNH motifs:







 consensus: e-x-h-H-i-x-p-x(2,4)-g-x(5,6)-N-l-x(3)-t-p-x(2,3)-H-x(3)-h ; capitalized letters are most conserved.


Scientific works: 





My contribution
By mJemboss software 

Statistics on the protein properties:

  
 one signal cleavage site in  the protein sequence:
 

Poor Pest motif:



Virtual 2G-gel:





In the sequence there are two motifs:

-DVDHK ( D/E X)K


-HSRSNLQAICRVCH


consensus:e-x-h-H-i-x-p-x(2,4)-g-x(5,6)-N-l-x(3)-t-p-x(2,3)-H-x(3)-h